The Mila COVID-19 Taskforce is a collaboration between researchers to answer COVID-19 research questions via data-driven methods. Our team is composed of members from the Université de Montréal, Yale University and McGill University. Participating research laboratories include Mila, Krishnaswamy Lab, MHI-omics, Kaufmann Lab, Quantitative and Translational Medicine Laboratory, and Smith Lab.

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Faculty

Morgan Craig
Université de Montréal, CHU Sainte-Justine Research Center
Julie Hussin
Université de Montréal, Montreal Heart Institute
Daniel Kaufmann
Université de Montréal, CHUM Research Centre
Smita Krishnaswamy
Yale University
Martin Smith
Université de Montréal, CHU Sainte-Justine Research Center
Guy Wolf
Université de Montréal, Mila - Quebec AI Institute, CHUM Research Centre
Sirui Zhou
Sirui Zhou
McGill University

Researchers

Jean-Christophe Grenier
Université de Montréal, Montreal Heart Institute
Jessie Huang
Yale University

Graduate Students

Elsa Brunet-Ratnasingham
Elsa Brunet-Ratnasingham
Université de Montréal, CHUM Research Centre
Dominique Fournelle
Université de Montréal, Montreal Heart Institute
Fatima Mostefai
Université de Montréal, Montreal Heart Institute
Sacha Morin
Université de Montréal, Mila - Quebec AI Institute
Shuang Ni
Université de Montréal, Mila - Quebec AI Institute

Publications

2022
February
PDF Multiscale PHATE exploration of SARS-CoV-2 data reveals multimodal signatures of disease.
Manik Kuchroo, Jessie Huang, Patrick Wong, Jean-Christophe Grenier, Dennis Shung, Alexander Tong, Carolina Lucas, Jon Klein, Daniel Burkhardt, Scott Gigante, and others.
Nature Biotechnology.
2022
February
PDF Population genomics approaches for genetic characterization of SARS-CoV-2 lineages.
Fatima Mostefai, Isabel Gamache, Arnaud N'Guessan, Justin Pelletier, Jessie Huang, Carmen Lia Murall, Ahmad Pesaranghader, Vanda Gaonac'h-Lovejoy, David J Hamelin, Raphaël Poujol, and others.
Frontiers in Medicine.
2021
December
PDF Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes.
Bastien Paré, Marieke Rozendaal, Sacha Morin, Léa Kaufmann, Shawn M Simpson, Raphaël Poujol, Fatima Mostefai, Jean-Christophe Grenier, Henry Xing, Miguelle Sanchez, and others.
PloS one 16(12).
2021
July
PDF COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes.
Adrianne L Jenner, Rosemary A Aogo, Sofia Alfonso, Vivienne Crowe, Xiaoyan Deng, Amanda P Smith, Penelope A Morel, Courtney L Davis, Amber M Smith, and Morgan Craig.
PLoS pathogens 17(7).

Affiliations

Mila Mila Yale UdeM CHUM CHUSJ